Summary
Overview
Work History
Education
Skills
Citizenship:
Languages
Websites
Mentoring Experience
Accomplishments
Peer-Reviewed Publications (listed by most recent)
Conferences
Reference
Timeline
Generic

Sharmin Begum

Montreal,Quebec

Summary

  • Hardworking and highly motivated researcher with a robust background in immunology,molecular biology, microbiology, biochemistry and virology.
  • Expert in host-pathogen interaction and viral pathogenesis.
  • Leveraging skills in molecular biology techniques, cell culture, Immunofluorescence and immune profiling.
  • Self-developed and reliable team member, and capable of working in a highly paced research environment and meeting deadlines.
  • Skilled in both technical methodologies and collaborative project management.

Overview

16
16
years of professional experience

Work History

Postdoctoral Researcher

Human retrovirology laboratory/IRCM/McGill University
Montreal, Quebec
02.2021 - 08.2024
  • Pre-clinical evaluation of a novel combination therapy to reduce the HIV reservoir by targeting host apoptotic pathways in a humanized mouse model.
  • Comparative analysis of SARS-CoV-2 viral entry and cell tropism to understand infection patterns.

Postdoctoral Research Fellow

Microbiology, Immunology and Infectious Diseases/University of Calgary
Calgary, Alberta
11.2019 - 11.2020
  • Investigated gastrointestinal inflammation using a murine colitis model.
  • Designed research studies to explore specific hypotheses, and supervised laboratory personnel.

Research Officer

Parasitology Laboratory/International Centre for Diarrhoeal Disease Research, Bangladesh (icddr,b)
Dhaka, Bangladesh
07.2010 - 08.2013
  • Multiplex qPCR assay targeting helminths, protozoa, bacteria, and virus detection.
  • Multiplex gene expression array card analysis for different enteropathogen detection.
  • Gut function tests and the detection of various parasite antigens, antibodies, and various inflammatory markers.
  • Assay validation, data organization, and communication with collaborators (NIH, multi-site Gates Foundation, and next-generation molecular diagnostics for developing countries).

Research Fellow

Parasitology Laboratory/International Centre for Diarrhoeal Disease Research, Bangladesh (icddr,b)
Dhaka, Bangladesh
02.2009 - 06.2010
  • A birth cohort study focusing on intracellular cytokine responses delivers critical insights into the human immune system.

Education

Ph.D. - Microbiology, Immunology, And Infectious Diseases

University of Calgary
Calgary, AB
11-2019

Master of Science - Biochemistry And Molecular Biology

University of Dhaka
Dhaka, Bangladesh
02-2010

Bachelor of Science - Biochemistry And Molecular Biology

University of Dhaka
Dhaka, Bangladesh
02-2009

Skills

Molecular Biology

DNA /RNA isolation,

Gel electrophoresis,

RT-PCR, qPCR,

Gene silencing (siRNA, shRNA),

Lentivirus production (gene knockdown, gene transduction),

Cloning,

Plasmid preparation

Biochemistry

Western blot,

Immunoprecipitation (IP),

Immunohistology (IHC),

ELISA,

Enzyme activity assays,

Multiplex Biomarker array

Flow Cytometry

Immune profiling

Compensation

Virology

HIV and SARS-CoV-2 infection,

Plaque assay,

Work experience in BSL-2 and BSL-3 laboratory

In vivo techniques: Mouse handling

HIV infection,

Subcutaneous and Intraperitoneal injections,

Jugular bleeding,

Genotyping

Cell Biology

Cell Culture: adherent and non- adherent cells, Primary cell from mouse bone marrow, and PBMCs,

Cell viability assays,

Cell transfection,

Immunofluorescence,

Confocal Microscopy

Computational Biology

Proteomics data analyses,

Pathway enrichment analyses,

Molecular network analyses,

Primer designing

Software

FlowJo,

ImageJ,

Image Lab,

GraphPad Prism,

Microsoft Office tools

Genotyping

Citizenship:

Canadian

Languages

English
Full Professional
French
Limited

Mentoring Experience

  • Basic and advanced laboratory training for undergrads and master's students.
  • Assisted master's students in designing experiments for their thesis.

Accomplishments

  • Richard and Edith Strauss Postdoctoral Fellowship in Medicine 2023, McGill University.
  • CAHR Academic Scholarship 2023.
  • IRCM Postdoctoral fellowships for 2021 and 2022.
  • HPI NSERC CREATE studentship scholarship for 2016 and 2017.
  • Histochemical Society trainee travel award, Experimental Biology meeting (2016).
  • Intersociety Council for Pathology Information (ICPI) Travel Award, Experimental Biology meeting (2015).
  • Recruitment Award, University of Calgary (2013).
  • Dean’s Award for academic excellence, Faculty of Biological Sciences, University of Dhaka (2011).

Peer-Reviewed Publications (listed by most recent)

1. *Tiwari S, *Begum S, Moreau F, Gorman H and Chadee K (2021) Autophagy is required during high MUC2 mucin biosynthesis in colonic goblet cells to contend metabolic stress. Am J Physiol Gastrointest. Liver Physiol. Impact Factor (IF): 4.87 (* Denotes equal contribution).

2. Begum S, Moreau F, Dufour A, and Chadee K (2021) Entamoeba histolytica exploits the autophagy pathway in macrophages to trigger inflammation in disease pathogenesis. Mucosal Immunology. IF: 9.0

3. Begum S, Gorman H, Chadha A, and Chadee K (2021) Entamoeba histolytica. Trends Parasitol. IF: 10.5

4. Begum S, Gorman H, Chadha A, and Chadee K (2020) Role of inflammasomes in innate host defense against Entamoeba histolytica. J Leukoc Biol. IF: 6.0

5. Begum S, Moreau F, Leon Coria A, and Chadee K (2019) Entamoeba histolytica stimulates the alarmin molecule HMGB1 from macrophages to amplify innate host defenses. Mucosal Immunology. IF: 9.0

6. St-Pierre J, Moreau F, Cornick S, Quach J, Begum S, et al. (2017) The macrophage cytoskeleton acts as a contact sensor upon interaction with E. histolytica to triggerIL-1β secretion. PLOS Pathogens. IF: 6.7

7.  Liu J, Gratz J, Amour C, Nshama R, Walongo T, Maro A, Mduma E, Platts-Mills J, Boisen N, Nataro J, Haverstick DM, Kabir F, Lertsethtakarn P, Silapong S, Jeamwattanalert P, Bodhidatta L, Mason C, Begum S, et al. (2016) Optimization of Quantitative PCR Methods for Enteropathogen Detection. PLoS One. IF: 3.7

8. Taniuchi M, Platts-Mills JA, Begum S, et al. (2016) Impact of enterovirus and other enteric pathogens on oral polio and rotavirus vaccine performance in Bangladeshi infants. Vaccine. IF: 4.9

9. Gilchrist CA, Petri SE, Schneider BN, Reichman DJ, Jiang N, Begum S, et al. (2015) Role of the Gut Microbiota of Children in Diarrhea Due to the Protozoan Parasite E. histolytica. J Infect Dis. IF: 6.4

10. Begum S, Quach J, and Chadee K (2015) Immune Evasion Mechanisms of Entamoeba histolytica: Progression to Disease. Front Microbiol. IF: 6.0

11. Liu J, Lurain K, Sobuz SU, Begum S, et al. (2015) Molecular genotyping and quantitation assay for rotavirus surveillance. J Virol Methods. IF: 2.6

12. Taniuchi M, Begum S, et al. (2015) Kinetics of poliovirus shedding following oral vaccinationas measured by quantitative reverse transcription-PCR versus culture. J Clin Microbiol. IF: 5.9

13. Liu J, Kabir F, Manneh J, Lertsethtakarn P, Begum S, et al. (2014) Development and assessment of molecular diagnostic tests for 15 enteropathogens causing childhood diarrhea: a multicentre study. The Lancet Infectious Diseases. IF: 56.3

14. Platts-Mills JA, Liu J, Gratz J, Mduma E, Amour C, Swai N, Taniuchi M, Begum S, et al. (2014) Detection of Campylobacter in stool and determination of significance by culture, enzyme immunoassay, and PCR in developing countries. J Clin Microbiol. IF: 5.9

15. Taniuchi M, Sobuz SU, Begum S, et al. (2013) Etiology of diarrhea in Bangladeshi infants in the first year of life analyzed using molecular methods. J Infect Dis. IF: 6.4

Conferences

  • IRCM Scientific Forum, 2022, Quebec, Canada. (Flash Talk)
  • Canadian Association for HIV Research 2023, Quebec City, Quebec, Canada. (Oral)
  • CanCURE Annual Meeting, 2022, Montreal, Quebec, Canada. (Flash Talk)
  • IRCM Scientific Forum, 2022, Orford, Quebec, Canada. (Poster)
  • Canadian Association for HIV Research 2022. (Poster)
  • Experimental Biology 2017, Chicago, USA. (Oral and Poster)
  • AMOEBAC 2016, New Delhi, India. (Oral)
  • Experimental Biology 2016, San Diego, USA. (Oral)
  • XVII International seminar on Amediasis 2016, Campeche, Mexico. (Oral)
  • Experimental Biology 2015 Boston, MA, USA. (Oral)
  • Canadian Digestive DiseasesWeek (CDDW) 2015, Calgary, Canada. (Oral and Poster)
  • Banff Inflammation Workshop (BIW) 2015, Calgary, Canada. (Poster)

Reference

1. Kris Chadee, PhD

Microbiology, Immunology, and Infectious Diseases 

University of Calgary

Phone: +1 403-210-3975

Email: kchadee@ucalgary.ca

2. Eric A. Cohen, PhD (Director of the Human Retrovirology unit, IRCM)

Microbiology, Infectiology, and Immunology 

University of Montreal

Phone: +1 514-987-5804

Email: eric.cohen@ircm.qc.ca

Timeline

Postdoctoral Researcher

Human retrovirology laboratory/IRCM/McGill University
02.2021 - 08.2024

Postdoctoral Research Fellow

Microbiology, Immunology and Infectious Diseases/University of Calgary
11.2019 - 11.2020

Research Officer

Parasitology Laboratory/International Centre for Diarrhoeal Disease Research, Bangladesh (icddr,b)
07.2010 - 08.2013

Research Fellow

Parasitology Laboratory/International Centre for Diarrhoeal Disease Research, Bangladesh (icddr,b)
02.2009 - 06.2010

Ph.D. - Microbiology, Immunology, And Infectious Diseases

University of Calgary

Master of Science - Biochemistry And Molecular Biology

University of Dhaka

Bachelor of Science - Biochemistry And Molecular Biology

University of Dhaka
Sharmin Begum