Molecular Biology
DNA /RNA isolation,
Gel electrophoresis,
RT-PCR, qPCR,
Gene silencing (siRNA, shRNA),
Lentivirus production (gene knockdown, gene transduction),
Cloning,
Plasmid preparation
Biochemistry
Western blot,
Immunoprecipitation (IP),
Immunohistology (IHC),
ELISA,
Enzyme activity assays,
Multiplex Biomarker array
Flow Cytometry
Immune profiling
Compensation
Virology
HIV and SARS-CoV-2 infection,
Plaque assay,
Work experience in BSL-2 and BSL-3 laboratory
In vivo techniques: Mouse handling
HIV infection,
Subcutaneous and Intraperitoneal injections,
Jugular bleeding,
Genotyping
Cell Biology
Cell Culture: adherent and non- adherent cells, Primary cell from mouse bone marrow, and PBMCs,
Cell viability assays,
Cell transfection,
Immunofluorescence,
Confocal Microscopy
Computational Biology
Proteomics data analyses,
Pathway enrichment analyses,
Molecular network analyses,
Primer designing
Software
FlowJo,
ImageJ,
Image Lab,
GraphPad Prism,
Microsoft Office tools
Genotyping
Canadian
1. *Tiwari S, *Begum S, Moreau F, Gorman H and Chadee K (2021) Autophagy is required during high MUC2 mucin biosynthesis in colonic goblet cells to contend metabolic stress. Am J Physiol Gastrointest. Liver Physiol. Impact Factor (IF): 4.87 (* Denotes equal contribution).
2. Begum S, Moreau F, Dufour A, and Chadee K (2021) Entamoeba histolytica exploits the autophagy pathway in macrophages to trigger inflammation in disease pathogenesis. Mucosal Immunology. IF: 9.0
3. Begum S, Gorman H, Chadha A, and Chadee K (2021) Entamoeba histolytica. Trends Parasitol. IF: 10.5
4. Begum S, Gorman H, Chadha A, and Chadee K (2020) Role of inflammasomes in innate host defense against Entamoeba histolytica. J Leukoc Biol. IF: 6.0
5. Begum S, Moreau F, Leon Coria A, and Chadee K (2019) Entamoeba histolytica stimulates the alarmin molecule HMGB1 from macrophages to amplify innate host defenses. Mucosal Immunology. IF: 9.0
6. St-Pierre J, Moreau F, Cornick S, Quach J, Begum S, et al. (2017) The macrophage cytoskeleton acts as a contact sensor upon interaction with E. histolytica to triggerIL-1β secretion. PLOS Pathogens. IF: 6.7
7. Liu J, Gratz J, Amour C, Nshama R, Walongo T, Maro A, Mduma E, Platts-Mills J, Boisen N, Nataro J, Haverstick DM, Kabir F, Lertsethtakarn P, Silapong S, Jeamwattanalert P, Bodhidatta L, Mason C, Begum S, et al. (2016) Optimization of Quantitative PCR Methods for Enteropathogen Detection. PLoS One. IF: 3.7
8. Taniuchi M, Platts-Mills JA, Begum S, et al. (2016) Impact of enterovirus and other enteric pathogens on oral polio and rotavirus vaccine performance in Bangladeshi infants. Vaccine. IF: 4.9
9. Gilchrist CA, Petri SE, Schneider BN, Reichman DJ, Jiang N, Begum S, et al. (2015) Role of the Gut Microbiota of Children in Diarrhea Due to the Protozoan Parasite E. histolytica. J Infect Dis. IF: 6.4
10. Begum S, Quach J, and Chadee K (2015) Immune Evasion Mechanisms of Entamoeba histolytica: Progression to Disease. Front Microbiol. IF: 6.0
11. Liu J, Lurain K, Sobuz SU, Begum S, et al. (2015) Molecular genotyping and quantitation assay for rotavirus surveillance. J Virol Methods. IF: 2.6
12. Taniuchi M, Begum S, et al. (2015) Kinetics of poliovirus shedding following oral vaccinationas measured by quantitative reverse transcription-PCR versus culture. J Clin Microbiol. IF: 5.9
13. Liu J, Kabir F, Manneh J, Lertsethtakarn P, Begum S, et al. (2014) Development and assessment of molecular diagnostic tests for 15 enteropathogens causing childhood diarrhea: a multicentre study. The Lancet Infectious Diseases. IF: 56.3
14. Platts-Mills JA, Liu J, Gratz J, Mduma E, Amour C, Swai N, Taniuchi M, Begum S, et al. (2014) Detection of Campylobacter in stool and determination of significance by culture, enzyme immunoassay, and PCR in developing countries. J Clin Microbiol. IF: 5.9
15. Taniuchi M, Sobuz SU, Begum S, et al. (2013) Etiology of diarrhea in Bangladeshi infants in the first year of life analyzed using molecular methods. J Infect Dis. IF: 6.4
1. Kris Chadee, PhD
Microbiology, Immunology, and Infectious Diseases
University of Calgary
Phone: +1 403-210-3975
Email: kchadee@ucalgary.ca
2. Eric A. Cohen, PhD (Director of the Human Retrovirology unit, IRCM)
Microbiology, Infectiology, and Immunology
University of Montreal
Phone: +1 514-987-5804
Email: eric.cohen@ircm.qc.ca