Summary
Overview
Work History
Education
Skills
Websites
Research
Fellowships
Instruments used
Research interests
Awards
Publications
Hobbies and Interests
Training
Mentoring Experience
Languages
Interests
Timeline
Generic

Sabyasachi Sarkar

Berkeley,CA

Summary

Dynamic individual with hands-on experience in Enzymology and talent for navigating challenges. Brings strong problem-solving skills and proactive approach to new tasks. Known for adaptability, creativity, and results-oriented mindset. Committed to making meaningful contributions and advancing organizational goals.

Overview

10
10
years of professional experience

Work History

Postdoctoral Researcher

University of California Berkeley
07.2023 - Current
  • Company Overview: California Institute for Quantitative Biosciences (QB3)
  • Advisor: Prof. Judith P. Klinman
  • Thiol-Reactive Photoactive Probes for the Site-Specific Heating of Proteins
  • Impact of site-specific heating initiated by photoactivated probes towards enzyme catalysis

Student Mentoring

UC Berkeley
01.2023 - Current
  • Mentored two undergraduate students in molecular biology, biophysical characterization and enzyme catalysis
  • Supervised research projects focusing on site specific heating of proteins

Graduate Student

Indian Institute of Technology Kanpur
07.2015 - 06.2023
  • Studied multiheme enzymes, especially the diheme enzyme MauG, utilizing the synthetic analogs
  • Investigated their electronic structures as well as the reactivities
  • Examined the potential catalytic applications of porphyrin π-cation radical dimers

Senior Research Fellow

Indian Institute of Technology Kanpur
07.2017 - 07.2020
  • Role: Graduate Student

Teaching Assistant of Bioinorganic Chemistry, NPTEL

Indian Institute of Technology Kanpur
07.2019 - 12.2019

Role: Teaching Assistant of an online course on Bioinorganic Chemistry

Teaching Assistant of Basic Chemistry Lab (B.S. level)

Indian Institute of Technology Kanpur
01.2019 - 12.2019

Role: Demonstrated various basic Inorganic, Organic and Physical Chemistry Wet Lab experiments

Student Mentoring

IIT Kanpur
01.2017 - 12.2019
  • Mentored three master’s-project students in their senior thesis work on electronic communication, structure-property relationships and catalytic applications in synthetic diheme systems
  • Mentored one summer-project student in basic synthesis, structure and characterization of porphyrin dimers

Teaching Assistant of Basic Chemistry Lab (B.S. level)

Indian Institute of Technology Kanpur
01.2019 - 05.2019

Role: Demonstrated various Inorganic and Organometallic Chemistry Wet Lab experiments to the Master's students

Teaching Assistant of Inorganic Chemistry Lab (M.S. level)

Indian Institute of Technology Kanpur
01.2018 - 05.2018

Role: Demonstrated various basic Inorganic, Organic and Physical Chemistry Wet Lab experiments

Junior Research Fellow

Indian Institute of Technology Kanpur
07.2015 - 07.2017
  • Role: Graduate fellow

Education

Ph.D. - Bioinorganic Chemistry

Indian Institute of Technology Kanpur
Kanpur
06-2023

Skills

  • Protein Dynamics
  • Expressing and purifying proteins
  • Site-directed mutagenesis
  • Enzyme Kinetics
  • Expertise in Biophysical Analysis
  • Design and syntheses of metalloporphyrin mono/di and higher oligomers and also other organometallic compounds
  • Expert in manipulating moisture and air-sensitive compounds with Schlenk line techniques
  • Handling various instruments like multi-nuclear NMR, EPR, Mossbauer, FT-IR, Fluoremeter, Cyclic voltameter, SQUID, FPLC, ESI-MS, LC/GC-MS, PCR etc
  • Well experienced in solving single crystal XRD utilizing various packages like SHELXTL, XP, XPREP, WINGX, ORTEP
  • Efficient in using other basic softwares e,g, Originpro, Diamond, Mercury, PHI, Jeol Delta, Doublet, Easyspin, Igor Pro Chimera, Pymol etc
  • DFT analysis using Gaussian

Research

  • Postdoctoral researcher, University of California Berkeley, California Institute for Quantitative Biosciences, Berkeley, CA, 94720, Thiol-Reactive Photoactive Probes for the Site-Specific Heating of Proteins, Prof. Judith P. Klinman, 07/2023-present
  • Graduate student, Indian Institute of Technology Kanpur, Kanpur, Uttar Pradesh, 208016, Studied multiheme enzymes, especially the diheme enzyme MauG, utilizing the synthetic analogs., Prof. S. P. Rath, 08/2015-05/2023

Fellowships

  • Senior Research Fellow, Indian Institute of Technology Kanpur, 01/2017-05/2020
  • Junior Research Fellow, Indian Institute of Technology Kanpur, 01/2015-05/2017

Instruments used

  • Fast Protein Liquid Chromatography (Akta)
  • UV-visible-NIR spectrophotometer (Perkin Elmer)
  • Diode Array spectrophotometer with low temperature facility (Agilent, Unisoku)
  • Fluorescence spectrometer (Perkin Elmer)
  • GC-MS (Agilent)
  • Glovebox (MBRAUN)
  • IR spectrometer
  • EPR spectrometer (Bruker)
  • NMR (Jeol 500 MHz, 400 MHz)
  • Mössbauer instrument (Wissel) with low temperature setup (JANIS)
  • Cyclic voltameter (BASi Epsilon)
  • Single crystal X-ray diffractometer (Bruker SMART APEX) equipped with CRYO Industries low-temperature apparatus.

Research interests

  • Protein Dynamics
  • Biophysical Chemistry
  • Biocatalysis
  • Bioinorganic Chemistry

Awards

  • SERB ITS Travel Grants, Awarded to attend the 16th European Biologic Inorganic Chemistry Conference (EuroBIC-16), July 17-21, 2022, Grenoble, hosted by University of Grenoble Alpes, France., 07/2022
  • Qualified Graduate Aptitude Test in Engineering (GATE), 01/2014
  • Qualified National Eligibility Test (NET) in Chemical Sciences, 01/2014

Publications

  • Unravelling the Relaxation Pathway and Excited State Dynamics of Ruthenium(II) Polypyridyl Complexes Incorporating Phosphorus-Based Monodentate Ligands

      R Mishra, A Saha, P Chatterjee, S Kundu, M Verma, S Sarkar, S Sivakumar, A Dutta and A K Patra*

      Chem. Eur. J. (Just accepted)

  • Probing Substrate Binding inside a Paramagnetic Cavity: A NMR Spectroscopy Toolbox for Combined Experimental and Theoretical Investigation

     S. Sarkar, C.-Q. Wu, S. Manna, D. Samanta, P. P.-Y. Chen* and S. P. Rath*

     Chem. Sci. 2024, 15, 17407.

  • Unusual Stabilisation of Remarkably Bent Tetra-Cationic Tetra-radical Intermolecular Fe(III) μ-Oxo Tetranuclear Complexes

     S. Sarkar, R. K. Tiwari, D. Samanta, T. Guchhait, E. C. Sanudo, G. Rajaraman and S. P. Rath*

     Angew. Chem. Int. Ed. 2024, 63, e202402344.

  • Binuclear Complexes with Single M-F-M Bridge (M: Fe, Mn, and Cu): A Critical Analysis of the Impact of Fluoride for Isoelectronic Hydroxide Substitution

     S. Sarkar, F. S. T. Khan, T. Guchhait and S. P. Rath*

     Coord. Chem. Rev. 2023, 479, 215003.

  • Cooperativity in Diiron(III)porphyrin Dication Diradical-Catalyzed Oxa-Diels-Alder Reactions: Spectroscopic and Mechanistic Insights

     S. Sarkar, P. Sarkar, D. Samanta, S. K. Pati and S. P. Rath*

     ACS Catal. 2022, 12, 9589.

  • Highly Oxidized Cobalt Porphyrin Dimer: Control of Spin Coupling via Bridge

      S. Sanfui, M. Usman, S. Sarkar, S. Pramanik, E. Garribba, and S. P. Rath*

      Inorg. Chem. 2022, 61, 8419.

  • Long-Range Intramolecular Spin Coupling Through-Redox-Active Bridge Upon Stepwise Oxidations: Control and Effect of Metal Ions

      Y. A. Pandit, S. J. Shah, M. Usman, S. Sarkar, E. Garribba, and S. P. Rath*

      Inorg. Chem. 2022, 61, 5270.

  • Ferromagnetic Coupling in Oxidovanadium(IV)–Porphyrin Radical Dimers

      A. K. Singh, M. Usman, S. Sarkar, G. Sciortino, D. Kumar, E. Garribba, and S. P. Rath*

      Inorg. Chem. 2021, 60, 16492.

  • Stepwise Oxidations of Nickel(II)-Iron(III) Heterobimetallic Porphyrin Dimer: Structure, Spectroscopic and Theoretical Investigation

      A. Kumar, S. Banerjee, S. Sarkar and S. P. Rath*

     Dalton Trans. 2019, 48, 10089.

  • Probing bis-FeIV MauG: Isolation of Highly Reactive Radical Intermediates

      T. Guchhait, S. Sarkar, Y. A. Pandit and S. P. Rath*

      Chem. Eur. J. 2017, 23, 10270.

  • Cyclic Bisporphyrin Based Flexible Molecular Containers: Controlling Guest Arrangements and Supramolecular Catalysis by Tuning Cavity Size

      P. Mondal, S. Sarkar, and S. P. Rath*

      Chem. Eur. J. 2017, 23, 7093.

Hobbies and Interests

  • Movies
  • Music
  • Travelling
  • Cricket

Training

  • Diheme Enzyme MauG: Our Understanding towards Nature’s Design, S. Sarkar and S. P. Rath
  • Research Scholars' Day, 08/14/2021, Kanpur, Uttar Pradesh, 208016, Covalent Attachment of Site Specific Photoactive-Heat Transfer Probes to Test Models of Long Range, Local Heating in Soybean Lipoxygenase, S. Sarkar, A. T. Iavarone and J. P. Klinman
  • Bay Area Chemical Biology Symposium, 10/21-22/2024, Stanford, CA, Probing bis-FeIV MauG: Isolation of Highly Reactive Radical Intermediates, S. Sarkar, T. Guchhait and S. P. Rath
  • 21st CRSI National Symposium in Chemistry (NSC-21), 07/14-16/2017, Hyderabad, Telangana, Probing bis-FeIV MauG: Isolation of Highly Reactive Radical Intermediates, S. Sarkar, T. Guchhait and S. P. Rath
  • Research Scholars' Day, 11/09/2019, Kanpur, Uttar Pradesh, 208016, Best Poster Prize, Probing bis-FeIV MauG: From Electronic Communication to Reactivity, S. Sarkar, T. Guchhait and S. P. Rath
  • 16th European Biologic Inorganic Chemistry Conference (EuroBIC-16), 07/17-21/2022, Grenoble, France

Mentoring Experience

  • Student Mentoring, UC Berkeley, Berkeley, CA, 94720, Mentored two undergraduate students in molecular biology, biophysical characterization and enzyme catalysis., 07/2023-ongoing
  • Student Mentoring, IIT Kanpur, Kanpur, Uttar Pradesh, 208016, Mentored three master’s-project students in their senior thesis work on electronic communication, structure-property relationships and catalytic applications in synthetic diheme systems., 01/2017-05/2019

Languages

English
Hindi

Interests

  • Movie
  • Sports
  • Hiking
  • Gardening

Timeline

Postdoctoral Researcher

University of California Berkeley
07.2023 - Current

Student Mentoring

UC Berkeley
01.2023 - Current

Teaching Assistant of Bioinorganic Chemistry, NPTEL

Indian Institute of Technology Kanpur
07.2019 - 12.2019

Teaching Assistant of Basic Chemistry Lab (B.S. level)

Indian Institute of Technology Kanpur
01.2019 - 05.2019

Teaching Assistant of Basic Chemistry Lab (B.S. level)

Indian Institute of Technology Kanpur
01.2019 - 12.2019

Teaching Assistant of Inorganic Chemistry Lab (M.S. level)

Indian Institute of Technology Kanpur
01.2018 - 05.2018

Senior Research Fellow

Indian Institute of Technology Kanpur
07.2017 - 07.2020

Student Mentoring

IIT Kanpur
01.2017 - 12.2019

Graduate Student

Indian Institute of Technology Kanpur
07.2015 - 06.2023

Junior Research Fellow

Indian Institute of Technology Kanpur
07.2015 - 07.2017

Ph.D. - Bioinorganic Chemistry

Indian Institute of Technology Kanpur
Sabyasachi Sarkar